STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCCL_1644Conserved hypothetical protein; Similar to D-alanyl-D-alanine carboxypeptidase. (216 aa)    
Predicted Functional Partners:
MCCL_1645
Conserved hypothetical protein; Similar to D-alanyl-D-alanine carboxypeptidase.
 
  
 
0.975
pbpA
Penicillin-binding protein 1.
  
  
 0.914
pbpD
Penicillin-binding protein 4; Belongs to the peptidase S11 family.
    
 0.909
MCCL_1407
Conserved hypothetical protein; Similar to penicillin-binding protein 1A.
     
 0.908
pbpC
Penicillin-binding protein 3.
     
 0.907
pbpB
Penicillin-binding protein 2.
     
 0.901
MCCL_1605
Conserved hypothetical protein; Similar to transglycosylase domain protein.
     
 0.900
pcrB
PcrB family protein; Prenyltransferase that catalyzes in vivo the transfer of the heptaprenyl moiety of heptaprenyl pyrophosphate (HepPP; 35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond- formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales.
       0.567
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.561
MCCL_1642
ATP-depentend DNA helicase.
       0.561
Your Current Organism:
Macrococcus caseolyticus
NCBI taxonomy Id: 458233
Other names: M. caseolyticus JCSC5402, Macrococcus caseolyticus JCSC5402, Macrococcus caseolyticus str. JCSC5402, Macrococcus caseolyticus strain JCSC5402
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