Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MCCL_0060 | MCCL_0330 | MCCL_0060 | MCCL_0330 | O-acetylhomoserine (thiol)-lyase homolog. | Conserved hypothetical protein; Similar to homocysteine S-methyltransferase. | 0.913 |
MCCL_0060 | MCCL_0985 | MCCL_0060 | MCCL_0985 | O-acetylhomoserine (thiol)-lyase homolog. | Homoserine dehydrogenase homolog. | 0.874 |
MCCL_0060 | MCCL_1427 | MCCL_0060 | MCCL_1427 | O-acetylhomoserine (thiol)-lyase homolog. | Conserved hypothetical protein; Similar to aminotransferase. | 0.926 |
MCCL_0060 | MCCL_1789 | MCCL_0060 | MCCL_1789 | O-acetylhomoserine (thiol)-lyase homolog. | Hypothetical protein. | 0.942 |
MCCL_0060 | MCCL_1790 | MCCL_0060 | MCCL_1790 | O-acetylhomoserine (thiol)-lyase homolog. | Cystathionine gamma-synthase homolog. | 0.871 |
MCCL_0060 | cysK | MCCL_0060 | MCCL_1900 | O-acetylhomoserine (thiol)-lyase homolog. | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.844 |
MCCL_0060 | ilvA | MCCL_0060 | MCCL_0857 | O-acetylhomoserine (thiol)-lyase homolog. | Thereonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.810 |
MCCL_0060 | luxS | MCCL_0060 | MCCL_1791 | O-acetylhomoserine (thiol)-lyase homolog. | Autoinducer-2 production protein; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.906 |
MCCL_0060 | metE | MCCL_0060 | MCCL_0261 | O-acetylhomoserine (thiol)-lyase homolog. | Methionine synthase II. | 0.932 |
MCCL_0330 | MCCL_0060 | MCCL_0330 | MCCL_0060 | Conserved hypothetical protein; Similar to homocysteine S-methyltransferase. | O-acetylhomoserine (thiol)-lyase homolog. | 0.913 |
MCCL_0330 | MCCL_0985 | MCCL_0330 | MCCL_0985 | Conserved hypothetical protein; Similar to homocysteine S-methyltransferase. | Homoserine dehydrogenase homolog. | 0.826 |
MCCL_0330 | MCCL_1427 | MCCL_0330 | MCCL_1427 | Conserved hypothetical protein; Similar to homocysteine S-methyltransferase. | Conserved hypothetical protein; Similar to aminotransferase. | 0.900 |
MCCL_0330 | MCCL_1789 | MCCL_0330 | MCCL_1789 | Conserved hypothetical protein; Similar to homocysteine S-methyltransferase. | Hypothetical protein. | 0.907 |
MCCL_0330 | MCCL_1790 | MCCL_0330 | MCCL_1790 | Conserved hypothetical protein; Similar to homocysteine S-methyltransferase. | Cystathionine gamma-synthase homolog. | 0.848 |
MCCL_0330 | cysK | MCCL_0330 | MCCL_1900 | Conserved hypothetical protein; Similar to homocysteine S-methyltransferase. | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.815 |
MCCL_0330 | ilvA | MCCL_0330 | MCCL_0857 | Conserved hypothetical protein; Similar to homocysteine S-methyltransferase. | Thereonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.802 |
MCCL_0330 | luxS | MCCL_0330 | MCCL_1791 | Conserved hypothetical protein; Similar to homocysteine S-methyltransferase. | Autoinducer-2 production protein; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.912 |
MCCL_0330 | metE | MCCL_0330 | MCCL_0261 | Conserved hypothetical protein; Similar to homocysteine S-methyltransferase. | Methionine synthase II. | 0.949 |
MCCL_0985 | MCCL_0060 | MCCL_0985 | MCCL_0060 | Homoserine dehydrogenase homolog. | O-acetylhomoserine (thiol)-lyase homolog. | 0.874 |
MCCL_0985 | MCCL_0330 | MCCL_0985 | MCCL_0330 | Homoserine dehydrogenase homolog. | Conserved hypothetical protein; Similar to homocysteine S-methyltransferase. | 0.826 |
page 1 of 5