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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCCL_1936GntR family regulatory protein homolog. (242 aa)    
Predicted Functional Partners:
MCCL_1938
Phosphotransferase system trehalose-specific enzyme IIBC component homolog.
 
  
 0.911
MCCL_0375
PTS system, trehalose-specific enzyme II, BC component.
 
  
 0.804
MCCL_1449
Conserved hypothetical protein; Similar to transcriptional regulator.
  
    0.756
MCCL_1937
Alpha-glucosidase homolog.
  
  
 0.679
MCCL_0278
Sugar-specific permease EIIA 1 domain.
 
  
 0.664
glcB
Glucose-specific PTS system IIABC component.
 
  
 0.640
MCCL_0373
Sucrose-6-phosphate hydrolase homolog; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
    0.573
MCCL_1015
Conserved hypothetical protein; Similar to transcription antiterminator.
 
   
 0.551
MCCL_0347
Conserved hypothetical protein; Similar to transcriptional regulator, XRE family.
  
    0.513
MCCL_0372
Conserved hypothetical protein; Similar to transcriptional regulator.
  
   
 0.508
Your Current Organism:
Macrococcus caseolyticus
NCBI taxonomy Id: 458233
Other names: M. caseolyticus JCSC5402, Macrococcus caseolyticus JCSC5402, Macrococcus caseolyticus str. JCSC5402, Macrococcus caseolyticus strain JCSC5402
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