STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCH01888.1Uncharacterized conserved protein%2C contains FHA domain. (584 aa)    
Predicted Functional Partners:
SCG95219.1
Uncharacterized protein conserved in archaea.
  
 
 0.931
cph2_1
Bacteriophytochrome cph2.
  
 
 0.903
luxQ_1
Autoinducer 2 sensor kinase/phosphatase luxQ.
  
 
 0.853
SCH09265.1
Tol-pal system protein YbgF.
  
 0.798
pyk
Pyruvate kinase.
    
  0.776
prkC_1
Serine/threonine-protein kinase PrkC.
 
 
   0.774
ribBA
Riboflavin biosynthesis protein ribBA.
    
  0.764
rpfG_2
Cyclic di-GMP phosphodiesterase response regulator RpfG.
  
 
 0.749
yycG_1
Sensor histidine kinase YycG.
    
  0.732
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
  
 
 0.716
Your Current Organism:
uncultured Coprococcus sp.
NCBI taxonomy Id: 458253
Other names: u. Coprococcus sp.
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