STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmBRibosomal RNA small subunit methyltransferase B. (449 aa)    
Predicted Functional Partners:
fmt
Methionyl-tRNA formyltransferase.
  
 
 0.998
rpsJ
BS13.
   
 0.980
rbgA
Ribosome biogenesis GTPase A.
 
 0.975
rplJ
50S ribosomal protein L10.
  
 0.952
rpmD
50S ribosomal protein L30.
   
 0.950
rplW
50S ribosomal protein L23.
   
  0.942
rlmN
Ribosomal RNA large subunit methyltransferase N.
  
  
 0.941
rplV
50S ribosomal protein L22.
   
  0.934
nusA
N utilization substance protein A.
  
 0.922
rpoB
DNA-directed RNA polymerase subunit beta.
  
 0.922
Your Current Organism:
uncultured Coprococcus sp.
NCBI taxonomy Id: 458253
Other names: u. Coprococcus sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.