Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCH37397.1 | sigE | SAMEA3545228_00717 | SAMEA3545228_00716 | sigma-E processing peptidase SpoIIGA. | Stage II sporulation protein GB. | 0.804 |
SCH37397.1 | spoIIAB | SAMEA3545228_00717 | SAMEA3545228_01461 | sigma-E processing peptidase SpoIIGA. | Anti-sigma F factor. | 0.534 |
SCH37397.1 | spoIIE | SAMEA3545228_00717 | SAMEA3545228_02534 | sigma-E processing peptidase SpoIIGA. | Stage II sporulation protein E. | 0.595 |
sigE | SCH37397.1 | SAMEA3545228_00716 | SAMEA3545228_00717 | Stage II sporulation protein GB. | sigma-E processing peptidase SpoIIGA. | 0.804 |
sigE | spoIIAB | SAMEA3545228_00716 | SAMEA3545228_01461 | Stage II sporulation protein GB. | Anti-sigma F factor. | 0.764 |
sigE | spoIIE | SAMEA3545228_00716 | SAMEA3545228_02534 | Stage II sporulation protein GB. | Stage II sporulation protein E. | 0.775 |
spoIIAB | SCH37397.1 | SAMEA3545228_01461 | SAMEA3545228_00717 | Anti-sigma F factor. | sigma-E processing peptidase SpoIIGA. | 0.534 |
spoIIAB | sigE | SAMEA3545228_01461 | SAMEA3545228_00716 | Anti-sigma F factor. | Stage II sporulation protein GB. | 0.764 |
spoIIAB | spoIIE | SAMEA3545228_01461 | SAMEA3545228_02534 | Anti-sigma F factor. | Stage II sporulation protein E. | 0.881 |
spoIIE | SCH37397.1 | SAMEA3545228_02534 | SAMEA3545228_00717 | Stage II sporulation protein E. | sigma-E processing peptidase SpoIIGA. | 0.595 |
spoIIE | sigE | SAMEA3545228_02534 | SAMEA3545228_00716 | Stage II sporulation protein E. | Stage II sporulation protein GB. | 0.775 |
spoIIE | spoIIAB | SAMEA3545228_02534 | SAMEA3545228_01461 | Stage II sporulation protein E. | Anti-sigma F factor. | 0.881 |