STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alaSAlanine--tRNA ligase. (888 aa)    
Predicted Functional Partners:
SCH09265.1
Tol-pal system protein YbgF.
  
 0.981
SCI28433.1
Enhanced serine sensitivity protein SseB.
   
 0.979
SCH13038.1
Uncharacterised protein.
   
 0.953
SCI41487.1
Uncharacterised protein.
   
 0.953
SCH30864.1
Uncharacterised protein.
   
 0.911
recA
Recombinase A.
  
 
 0.891
metG
Methionine--tRNA ligase.
  
  
 0.869
pheT
Phenylalanine--tRNA ligase beta subunit.
 
 
 0.863
valS
Valine--tRNA ligase.
 
  
 0.824
hisF_1
Imidazole glycerol phosphate synthase subunit HisF.
  
    0.806
Your Current Organism:
uncultured Coprococcus sp.
NCBI taxonomy Id: 458253
Other names: u. Coprococcus sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.