STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sigMRNA polymerase sigma factor sigM. (163 aa)    
Predicted Functional Partners:
SCI11905.1
Uncharacterised protein.
 
   0.950
rpoC
DNA-directed RNA polymerase subunit beta'.
    
 0.704
rpoB
DNA-directed RNA polymerase subunit beta.
    
 0.683
SCH42235.1
Uncharacterised protein.
  
 
 0.660
rpoE_1
Sigma-24.
  
     0.586
rpoE_2
Sigma-24.
  
     0.582
SCH28166.1
DNA-directed RNA polymerase subunit omega.
    
 0.559
rpoA
DNA-directed RNA polymerase subunit alpha.
    
 0.559
sigV_2
RNA polymerase sigma factor sigV.
  
     0.525
mepA_15
Staphylococcal virulence regulator protein A.
       0.511
Your Current Organism:
uncultured Coprococcus sp.
NCBI taxonomy Id: 458253
Other names: u. Coprococcus sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.