Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCH28166.1 | SCI22637.1 | SAMEA3545228_00540 | SAMEA3545228_02101 | DNA-directed RNA polymerase subunit omega. | Transcriptional regulator%2C effector-binding domain/component. | 0.468 |
SCH28166.1 | rpoA | SAMEA3545228_00540 | SAMEA3545228_01821 | DNA-directed RNA polymerase subunit omega. | DNA-directed RNA polymerase subunit alpha. | 0.999 |
SCH28166.1 | rpoB | SAMEA3545228_00540 | SAMEA3545228_02507 | DNA-directed RNA polymerase subunit omega. | DNA-directed RNA polymerase subunit beta. | 0.999 |
SCH28166.1 | rpoC | SAMEA3545228_00540 | SAMEA3545228_02506 | DNA-directed RNA polymerase subunit omega. | DNA-directed RNA polymerase subunit beta'. | 0.999 |
SCH28166.1 | sigA | SAMEA3545228_00540 | SAMEA3545228_01277 | DNA-directed RNA polymerase subunit omega. | Sigma-A. | 0.991 |
SCI22603.1 | SCI22637.1 | SAMEA3545228_02099 | SAMEA3545228_02101 | Cyclic lactone autoinducer peptide. | Transcriptional regulator%2C effector-binding domain/component. | 0.424 |
SCI22637.1 | SCH28166.1 | SAMEA3545228_02101 | SAMEA3545228_00540 | Transcriptional regulator%2C effector-binding domain/component. | DNA-directed RNA polymerase subunit omega. | 0.468 |
SCI22637.1 | SCI22603.1 | SAMEA3545228_02101 | SAMEA3545228_02099 | Transcriptional regulator%2C effector-binding domain/component. | Cyclic lactone autoinducer peptide. | 0.424 |
SCI22637.1 | SCI22671.1 | SAMEA3545228_02101 | SAMEA3545228_02102 | Transcriptional regulator%2C effector-binding domain/component. | Uncharacterised protein. | 0.451 |
SCI22637.1 | rpoA | SAMEA3545228_02101 | SAMEA3545228_01821 | Transcriptional regulator%2C effector-binding domain/component. | DNA-directed RNA polymerase subunit alpha. | 0.468 |
SCI22637.1 | rpoB | SAMEA3545228_02101 | SAMEA3545228_02507 | Transcriptional regulator%2C effector-binding domain/component. | DNA-directed RNA polymerase subunit beta. | 0.723 |
SCI22637.1 | rpoC | SAMEA3545228_02101 | SAMEA3545228_02506 | Transcriptional regulator%2C effector-binding domain/component. | DNA-directed RNA polymerase subunit beta'. | 0.468 |
SCI22637.1 | sigA | SAMEA3545228_02101 | SAMEA3545228_01277 | Transcriptional regulator%2C effector-binding domain/component. | Sigma-A. | 0.468 |
SCI22671.1 | SCI22637.1 | SAMEA3545228_02102 | SAMEA3545228_02101 | Uncharacterised protein. | Transcriptional regulator%2C effector-binding domain/component. | 0.451 |
rpoA | SCH28166.1 | SAMEA3545228_01821 | SAMEA3545228_00540 | DNA-directed RNA polymerase subunit alpha. | DNA-directed RNA polymerase subunit omega. | 0.999 |
rpoA | SCI22637.1 | SAMEA3545228_01821 | SAMEA3545228_02101 | DNA-directed RNA polymerase subunit alpha. | Transcriptional regulator%2C effector-binding domain/component. | 0.468 |
rpoA | rpoB | SAMEA3545228_01821 | SAMEA3545228_02507 | DNA-directed RNA polymerase subunit alpha. | DNA-directed RNA polymerase subunit beta. | 0.999 |
rpoA | rpoC | SAMEA3545228_01821 | SAMEA3545228_02506 | DNA-directed RNA polymerase subunit alpha. | DNA-directed RNA polymerase subunit beta'. | 0.999 |
rpoA | sigA | SAMEA3545228_01821 | SAMEA3545228_01277 | DNA-directed RNA polymerase subunit alpha. | Sigma-A. | 0.993 |
rpoB | SCH28166.1 | SAMEA3545228_02507 | SAMEA3545228_00540 | DNA-directed RNA polymerase subunit beta. | DNA-directed RNA polymerase subunit omega. | 0.999 |
page 1 of 2