STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvoA_3HTH-type transcriptional repressor yvoA. (244 aa)    
Predicted Functional Partners:
yvoA_2
HTH-type transcriptional repressor yvoA.
 
    
0.834
btr_1
Bacillibactin transport regulator.
 
  
 0.695
frlB
Fructosamine deglycase frlB.
 
  
 0.692
glcB
PTS system glucoside-specific EIICBA component.
  
 
 0.635
lutR
L-lactate utilization operon repressor.
  
    0.573
galS
Mgl repressor and galactose ultrainduction factor.
  
   
 0.548
agaC
PTS system N-acetylgalactosamine-specific EIIC component 1.
 
    0.545
degA
Degradation activator.
  
   
 0.533
nudF_2
ADP-ribose pyrophosphatase.
       0.532
ccpA
Glucose-resistance amylase regulator.
  
   
 0.530
Your Current Organism:
uncultured Coprococcus sp.
NCBI taxonomy Id: 458253
Other names: u. Coprococcus sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.