STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lutRL-lactate utilization operon repressor. (227 aa)    
Predicted Functional Partners:
yjbR
methylated-DNA--protein-cysteine methyltransferase.
       0.662
SCI40807.1
Cytidylate kinase.
       0.651
ydfH
Uncharacterized HTH-type transcriptional regulator ydfH.
 
  
 0.623
accD
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta.
  
  
 0.597
lrgA
Antiholin-like protein LrgA.
       0.590
cidB
Holin-like protein CidB.
       0.589
yvoA_3
HTH-type transcriptional repressor yvoA.
  
    0.573
fabG_1
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
   
 
 0.470
ydaD
General stress protein 39.
   
 
 0.470
fabG_2
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
   
 
 0.470
Your Current Organism:
uncultured Coprococcus sp.
NCBI taxonomy Id: 458253
Other names: u. Coprococcus sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.