STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplJ50S ribosomal protein L10. (162 aa)    
Predicted Functional Partners:
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
   
 0.999
SCH46124.1
Ribosomal protein L30E.
 
 0.999
rpsB
Vegetative protein 209.
  
 0.999
rplM
50S ribosomal protein L13.
   
 0.999
rpsD
30S ribosomal protein S4.
 
 0.999
rpsK
30S ribosomal protein S11.
  
 0.999
infA
Translation initiation factor IF-1.
  
 
 0.999
rplO
50S ribosomal protein L15.
  
 0.999
rpmD
50S ribosomal protein L30.
  
 0.999
rpsE
30S ribosomal protein S5.
  
 0.999
Your Current Organism:
uncultured Coprococcus sp.
NCBI taxonomy Id: 458253
Other names: u. Coprococcus sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.