OKZ36090.1 protein (Butyrivibrio crossotus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OKZ36090.1

Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology. (571 aa)

Predicted Functional Partners:

OKZ36092.1

0.997

OKZ36440.1

0.937

OKZ36093.1

0.924

OKZ36094.1

0.915

OKZ36096.1

0.868

OKZ36099.1

0.867

OKZ36091.1

0.866

OKZ36756.1

0.834

OKZ36258.1

0.818

OKZ36095.1

0.804

Your Current Organism:

Butyrivibrio crossotus

NCBI taxonomy Id: 45851
Other names: ATCC 29175, B. crossotus, DSM 2876, VPI T9-40A

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OKZ36090.1	OKZ36091.1	BHV86_08825	BHV86_08830	Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
OKZ36090.1	OKZ36092.1	BHV86_08825	BHV86_08835	Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
OKZ36090.1	OKZ36093.1	BHV86_08825	BHV86_08840	Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.924
OKZ36090.1	OKZ36094.1	BHV86_08825	BHV86_08850	Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.915
OKZ36090.1	OKZ36095.1	BHV86_08825	BHV86_08855	Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.804
OKZ36090.1	OKZ36096.1	BHV86_08825	BHV86_08860	Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.868
OKZ36090.1	OKZ36099.1	BHV86_08825	BHV86_08875	Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.867
OKZ36090.1	OKZ36258.1	BHV86_08825	BHV86_09730	Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.818
OKZ36090.1	OKZ36440.1	BHV86_08825	BHV86_08845	Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prepilin peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
OKZ36090.1	OKZ36756.1	BHV86_08825	BHV86_07055	Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.834
OKZ36091.1	OKZ36090.1	BHV86_08830	BHV86_08825	Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
OKZ36091.1	OKZ36092.1	BHV86_08830	BHV86_08835	Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
OKZ36091.1	OKZ36093.1	BHV86_08830	BHV86_08840	Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.551
OKZ36091.1	OKZ36094.1	BHV86_08830	BHV86_08850	Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.754
OKZ36091.1	OKZ36095.1	BHV86_08830	BHV86_08855	Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.529
OKZ36091.1	OKZ36440.1	BHV86_08830	BHV86_08845	Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prepilin peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.889
OKZ36092.1	OKZ36090.1	BHV86_08835	BHV86_08825	Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
OKZ36092.1	OKZ36091.1	BHV86_08835	BHV86_08830	Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
OKZ36092.1	OKZ36093.1	BHV86_08835	BHV86_08840	Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.918
OKZ36092.1	OKZ36094.1	BHV86_08835	BHV86_08850	Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.929