STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shal_0704KEGG: slo:Shew_3221 hypothetical protein. (386 aa)    
Predicted Functional Partners:
Shal_0851
KEGG: slo:Shew_0762 hypothetical protein.
  
     0.725
Shal_0739
KEGG: sbm:Shew185_1620 porin gram-negative type.
  
     0.714
Shal_2728
PFAM: porin Gram-negative type; KEGG: slo:Shew_2481 porin, gram-negative type.
  
     0.711
Shal_3021
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_1347 TonB-dependent receptor.
  
     0.711
Shal_2713
Serine/threonine protein kinase; PFAM: NERD domain protein; KEGG: slo:Shew_2466 hypothetical protein.
  
     0.707
Shal_2781
KEGG: slo:Shew_2522 decaheme cytochrome c.
  
     0.704
Shal_2714
PFAM: protein of unknown function DUF1260; KEGG: slo:Shew_2467 protein of unknown function DUF1260.
  
     0.702
Shal_3667
KEGG: son:SO_1779 decaheme cytochrome c.
  
     0.695
Shal_2780
KEGG: slo:Shew_2521 decaheme cytochrome c MtrF.
  
     0.675
Shal_0210
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: sbm:Shew185_3867 transcriptional regulator, CadC.
  
     0.674
Your Current Organism:
Shewanella halifaxensis
NCBI taxonomy Id: 458817
Other names: S. halifaxensis HAW-EB4, Shewanella halifaxensis HAW-EB4, Shewanella halifaxensis str. HAW-EB4, Shewanella halifaxensis strain HAW-EB4
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.