STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shal_1712KEGG: sfr:Sfri_2264 hypothetical protein. (141 aa)    
Predicted Functional Partners:
Shal_2995
KEGG: sbm:Shew185_1429 hypothetical protein.
  
     0.773
Shal_3067
KEGG: slo:Shew_2757 hypothetical protein.
  
     0.773
Shal_1158
KEGG: sbm:Shew185_3049 hypothetical protein.
  
     0.769
Shal_0911
KEGG: sfr:Sfri_3083 hypothetical protein.
  
     0.766
Shal_3885
KEGG: shn:Shewana3_3731 hypothetical protein.
  
     0.758
Shal_2993
PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_2722 GCN5-related N-acetyltransferase.
  
     0.756
Shal_2026
KEGG: slo:Shew_1938 hypothetical protein.
  
     0.755
Shal_2613
KEGG: slo:Shew_2408 hypothetical protein.
  
     0.739
Shal_2350
KEGG: shn:Shewana3_1604 hypothetical protein.
  
     0.724
Shal_3810
KEGG: sbm:Shew185_3811 hypothetical protein.
  
     0.721
Your Current Organism:
Shewanella halifaxensis
NCBI taxonomy Id: 458817
Other names: S. halifaxensis HAW-EB4, Shewanella halifaxensis HAW-EB4, Shewanella halifaxensis str. HAW-EB4, Shewanella halifaxensis strain HAW-EB4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.