Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Shal_2012PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rru:Rru_A0247 periplasmic binding protein/LacI transcriptional regulator. (333 aa)    
Predicted Functional Partners:
Shal_2010
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgl:SG0612 sugar ABC transporter ATP-binding component.
 
 0.995
Shal_2011
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: ypi:YpsIP31758_0911 ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.992
rbsD
RbsD or FucU transport; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.955
Shal_0262
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: ppr:PBPRB0721 putative ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.916
Shal_0263
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: ppr:PBPRB0720 putative permease of ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.916
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 
 0.916
Shal_0580
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: vco:VC0395_0009 ribose transport system permease protein RbsC.
 
 
 0.916
Shal_2426
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: ppr:PBPRB0019 putative AraH,Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 
 0.916
Shal_0264
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRB0719 putative ATP-binding protein of ABCtransporter.
 
 
 0.914
Shal_3789
KEGG: slo:Shew_0459 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
   
 
 0.893
Your Current Organism:
Shewanella halifaxensis
NCBI taxonomy Id: 458817
Other names: S. halifaxensis HAW-EB4, Shewanella halifaxensis HAW-EB4, Shewanella halifaxensis str. HAW-EB4, Shewanella halifaxensis strain HAW-EB4
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