Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Shal_2055 | Shal_2056 | KEGG: slo:Shew_1962 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C. | KEGG: sbl:Sbal_2079 hypothetical protein. | 0.663 |
Shal_2055 | Shal_2057 | KEGG: slo:Shew_1962 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C. | PFAM: Domain of unknown function DUF1904; KEGG: slo:Shew_1964 hypothetical protein. | 0.417 |
Shal_2055 | Shal_2058 | KEGG: slo:Shew_1962 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C. | PFAM: phospholipase D/Transphosphatidylase; KEGG: sbm:Shew185_2268 phospholipase D/transphosphatidylase. | 0.423 |
Shal_2056 | Shal_2055 | KEGG: sbl:Sbal_2079 hypothetical protein. | KEGG: slo:Shew_1962 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C. | 0.663 |
Shal_2056 | Shal_2057 | KEGG: sbl:Sbal_2079 hypothetical protein. | PFAM: Domain of unknown function DUF1904; KEGG: slo:Shew_1964 hypothetical protein. | 0.451 |
Shal_2056 | Shal_2058 | KEGG: sbl:Sbal_2079 hypothetical protein. | PFAM: phospholipase D/Transphosphatidylase; KEGG: sbm:Shew185_2268 phospholipase D/transphosphatidylase. | 0.451 |
Shal_2057 | Shal_2055 | PFAM: Domain of unknown function DUF1904; KEGG: slo:Shew_1964 hypothetical protein. | KEGG: slo:Shew_1962 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C. | 0.417 |
Shal_2057 | Shal_2056 | PFAM: Domain of unknown function DUF1904; KEGG: slo:Shew_1964 hypothetical protein. | KEGG: sbl:Sbal_2079 hypothetical protein. | 0.451 |
Shal_2057 | Shal_2058 | PFAM: Domain of unknown function DUF1904; KEGG: slo:Shew_1964 hypothetical protein. | PFAM: phospholipase D/Transphosphatidylase; KEGG: sbm:Shew185_2268 phospholipase D/transphosphatidylase. | 0.784 |
Shal_2058 | Shal_2055 | PFAM: phospholipase D/Transphosphatidylase; KEGG: sbm:Shew185_2268 phospholipase D/transphosphatidylase. | KEGG: slo:Shew_1962 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C. | 0.423 |
Shal_2058 | Shal_2056 | PFAM: phospholipase D/Transphosphatidylase; KEGG: sbm:Shew185_2268 phospholipase D/transphosphatidylase. | KEGG: sbl:Sbal_2079 hypothetical protein. | 0.451 |
Shal_2058 | Shal_2057 | PFAM: phospholipase D/Transphosphatidylase; KEGG: sbm:Shew185_2268 phospholipase D/transphosphatidylase. | PFAM: Domain of unknown function DUF1904; KEGG: slo:Shew_1964 hypothetical protein. | 0.784 |