STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shal_2282PFAM: SAF domain protein; KEGG: vvu:VV1_1748 flp pilus assembly protein CpaB. (270 aa)    
Predicted Functional Partners:
Shal_2281
PFAM: type II and III secretion system protein; transport-associated; KEGG: vvy:VV2660 flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family.
 
  
 0.990
Shal_2284
PFAM: peptidase A24A prepilin type IV; KEGG: rba:RB5170 similar to type IV prepilin peptidase CpaA.
 
  
 0.989
Shal_2276
KEGG: vvy:VV2654 flp pilus assembly protein, ATPase CpaE.
 
  
 0.985
Shal_2274
PFAM: type II secretion system protein; KEGG: vpa:VP2411 putative tight adherence TadB-related transmembrane protein.
 
  
 0.983
Shal_2273
PFAM: type II secretion system protein; KEGG: ppr:PBPRB0601 hypothetical putative tight adherence TadC-related transmembrane protein.
 
  
 0.981
Shal_2277
PFAM: TadE family protein; KEGG: ppr:PBPRB0605 hypothetical protein.
 
  
 0.960
Shal_2279
KEGG: ppr:PBPRB0607 hypothetical protein.
 
  
 0.957
Shal_2275
PFAM: type II secretion system protein E; KEGG: ppr:PBPRB0603 putative pilus assembly protein.
 
  
 0.953
Shal_2283
SMART: AAA ATPase; KEGG: ppr:PBPRB0612 hypothetical protein.
 
    0.940
Shal_2278
PFAM: TadE family protein; KEGG: ppr:PBPRB0606 hypothetical protein.
  
  
 0.880
Your Current Organism:
Shewanella halifaxensis
NCBI taxonomy Id: 458817
Other names: S. halifaxensis HAW-EB4, Shewanella halifaxensis HAW-EB4, Shewanella halifaxensis str. HAW-EB4, Shewanella halifaxensis strain HAW-EB4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.