STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shal_2880KEGG: vvy:VV1518 hypothetical protein. (175 aa)    
Predicted Functional Partners:
Shal_2881
KEGG: vvy:VV1519 P pilus assembly protein, chaperone PapD.
       0.588
Shal_2882
PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: vvy:VV1520 P pilus assembly protein, porin PapC.
       0.580
Shal_2883
KEGG: vvy:VV1521 hypothetical protein.
       0.580
Shal_2879
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: vvu:VV1_2744 response regulator.
       0.453
Your Current Organism:
Shewanella halifaxensis
NCBI taxonomy Id: 458817
Other names: S. halifaxensis HAW-EB4, Shewanella halifaxensis HAW-EB4, Shewanella halifaxensis str. HAW-EB4, Shewanella halifaxensis strain HAW-EB4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.