Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Shal_3207PFAM: protein of unknown function DUF819; KEGG: slo:Shew_2905 protein of unknown function DUF819. (422 aa)    
Predicted Functional Partners:
kdsA
TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: sbl:Sbal_0703 2-dehydro-3-deoxyphosphooctonate aldolase.
       0.672
Shal_0246
PFAM: peptidase M14 carboxypeptidase A; KEGG: slo:Shew_0105 peptidase M14, carboxypeptidase A.
  
     0.669
Shal_3209
PFAM: Invasion gene expression up-regulator SirB; KEGG: son:SO_3830 hypothetical protein.
       0.569
Shal_3208
KEGG: slo:Shew_2906 hypothetical protein.
       0.567
Shal_0010
PFAM: amidohydrolase; WD40 domain protein beta Propeller; KEGG: slo:Shew_0013 amidohydrolase.
  
     0.565
Shal_4181
PFAM: peptidase M14 carboxypeptidase A; KEGG: sbl:Sbal_4213 peptidase M14, carboxypeptidase A.
  
     0.483
Shal_3788
KEGG: slo:Shew_0460 hypothetical protein.
 
     0.466
Shal_2572
KEGG: slo:Shew_2374 NAD-dependent epimerase/dehydratase.
  
     0.463
prmC
Modification methylase, HemK family; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
       0.430
Shal_0547
PFAM: Na+/H+ antiporter NhaC; KEGG: slo:Shew_0344 Na+/H+ antiporter NhaC.
  
     0.409
Your Current Organism:
Shewanella halifaxensis
NCBI taxonomy Id: 458817
Other names: S. halifaxensis HAW-EB4, Shewanella halifaxensis HAW-EB4, Shewanella halifaxensis str. HAW-EB4, Shewanella halifaxensis strain HAW-EB4
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