Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Shal_3208KEGG: slo:Shew_2906 hypothetical protein. (262 aa)    
Predicted Functional Partners:
Shal_3209
PFAM: Invasion gene expression up-regulator SirB; KEGG: son:SO_3830 hypothetical protein.
  
  
 0.879
Shal_3438
PFAM: porin Gram-negative type; KEGG: slo:Shew_2283 porin, gram-negative type.
  
     0.661
Shal_3063
SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_2781 TPR repeat-containing protein.
  
     0.604
Shal_2064
PFAM: FMN-binding domain protein; KEGG: slo:Shew_1972 FMN-binding domain protein.
  
     0.599
Shal_0852
Putative diguanylate cyclase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; KEGG: slo:Shew_0763 putative PAS/PAC sensor protein.
  
     0.591
Shal_3207
PFAM: protein of unknown function DUF819; KEGG: slo:Shew_2905 protein of unknown function DUF819.
       0.567
Shal_3834
KEGG: slo:Shew_0408 hypothetical protein.
  
     0.552
Shal_3640
KEGG: saz:Sama_3031 hypothetical protein.
  
     0.541
Shal_0601
KEGG: slo:Shew_3358 outer membrane efflux family protein, putative.
  
     0.519
Shal_3611
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: shn:Shewana3_0608 putative signal transduction protein.
  
     0.517
Your Current Organism:
Shewanella halifaxensis
NCBI taxonomy Id: 458817
Other names: S. halifaxensis HAW-EB4, Shewanella halifaxensis HAW-EB4, Shewanella halifaxensis str. HAW-EB4, Shewanella halifaxensis strain HAW-EB4
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