STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shal_3617PFAM: MotA/TolQ/ExbB proton channel; KEGG: dps:DP2973 similar to biopolymer transport protein (ExbB). (172 aa)    
Predicted Functional Partners:
Shal_3616
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dps:DP2972 biopolymer transport protein (ExbD2).
 
 
 0.984
Shal_3615
TIGRFAM: TonB family protein; KEGG: dps:DP2971 similar to TonB protein.
 
 
 0.943
Shal_2722
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sbm:Shew185_1628 biopolymer transport protein ExbD/TolR.
 
 
 0.931
Shal_3619
KEGG: dps:DP2975 hypothetical protein.
 
  
 0.901
Shal_3625
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dps:DP2981 related to TonB dependent outer membrane receptor.
 
  
 0.842
Shal_3618
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dps:DP2974 similar to transport protein TolQ.
 
   
0.841
Shal_2721
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.784
Shal_3614
KEGG: dps:DP2970 hypothetical protein.
  
    0.777
tolR
Biopolymer transport TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.776
Shal_3402
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sdn:Sden_0787 biopolymer transport protein ExbD/TolR.
  
 
 0.773
Your Current Organism:
Shewanella halifaxensis
NCBI taxonomy Id: 458817
Other names: S. halifaxensis HAW-EB4, Shewanella halifaxensis HAW-EB4, Shewanella halifaxensis str. HAW-EB4, Shewanella halifaxensis strain HAW-EB4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.