Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T03_8653Uncharacterized protein. (62 aa)    
Predicted Functional Partners:
FANCM
Fanconi anemia group M protein.
    
  0.710
lin-54
Protein lin-54.
    
  0.545
oxt
Xylosyltransferase oxt.
    
  0.507
Rpa2
Replication protein A 32 kDa subunit.
    
  0.506
sas6
Spindle assembly abnormal protein 6-like protein.
    
  0.506
apitd1
Centromere protein S.
    
  0.498
Kmt2e
Histone-lysine N-methyltransferase 2E.
   
  0.478
TONSL
Tonsoku-like protein.
    
  0.463
ERCC1
DNA excision repair protein ERCC-1.
    
  0.458
lin-9
Protein lin-9.
    
  0.452
Your Current Organism:
Trichinella britovi
NCBI taxonomy Id: 45882
Other names: T. britovi
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