STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
notch1-2Neurogenic locus notch-like protein. (531 aa)    
Predicted Functional Partners:
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
   
 0.860
TONSL
Tonsoku-like protein.
   
 0.833
unc-89
Muscle M-line assembly protein unc-89.
    
 0.785
unc-89-2
Muscle M-line assembly protein unc-89.
    
 0.785
unc-10
Rab-3-interacting molecule unc-10.
    
 0.727
pol-43
Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM.
    
 0.713
Su(H)
Suppressor of hairless protein.
    
 0.708
PTK7
Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.698
oxt
Xylosyltransferase oxt.
    
 0.695
PREB
Prolactin regulatory element-binding protein.
    
 0.691
Your Current Organism:
Trichinella britovi
NCBI taxonomy Id: 45882
Other names: T. britovi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.