STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nus1Nogo-B receptor. (312 aa)    
Predicted Functional Partners:
Pdss2
Decaprenyl-diphosphate synthase subunit 2.
  
 
 0.921
FNTA
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha.
     
 0.910
Fntb
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
     
 0.908
EPRS
Bifunctional glutamate/proline--tRNA ligase.
  
  
 0.900
Fbxo30-2
F-box only protein 30.
  
 
 0.887
IPI2
Isopentenyl-diphosphate Delta-isomerase II; Belongs to the universal ribosomal protein uL15 family.
  
 
 0.857
PIGC
Phosphatidylinositol N-acetylglucosaminyltransferase subunit C.
   
 
  0.777
sec59
Dolichol kinase sec59.
   
 
 0.735
alh-13
Putative delta-1-pyrroline-5-carboxylate synthase.
     
 0.733
Pars2
Putative proline--tRNA ligase, mitochondrial.
  
  
 0.716
Your Current Organism:
Trichinella britovi
NCBI taxonomy Id: 45882
Other names: T. britovi
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