STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLOAM0022Tartrate dehydratase alpha subunit (ttdA)/Fumarate hydratase class I,alpha chain (N-terminal); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (283 aa)    
Predicted Functional Partners:
CLOAM0023
Tartrate dehydratase beta subunit (ttdB)/fumarate hydratase class I, beta chain (C-terminal); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 0.999
mae
NAD-dependent malic enzyme (NAD-ME); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.937
CLOAM1684
Formate dehydrogenase major subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
   
 
 0.821
aspC
Aminotransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
  0.802
CLOAM1245
Aminotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
    
  0.802
CLOAM0020
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.773
CLOAM0021
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.773
CLOAM0019
Putative acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.666
CLOAM0324
Pyruvate-ferredoxin/flavodoxin oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.594
gcvPB
Probable glycine dehydrogenase (decarboxylating) subunit 2; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily.
   
    0.502
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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