Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CLOAM0083Ferredoxin, 4Fe-4S; Function of homologous gene experimentally demonstrated in an other organism; carrier. (56 aa)    
Predicted Functional Partners:
hymC
[Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit alpha; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
 0.772
CLOAM0324
Pyruvate-ferredoxin/flavodoxin oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.676
CLOAM0081
Hypothetical protein; No homology to any previously reported sequences.
       0.636
CLOAM0082
Hypothetical protein; Doubtful CDS.
       0.636
CLOAM1684
Formate dehydrogenase major subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
   
 
 0.612
CLOAM1631
Dihydropyrimidine dehydrogenase (NADP+); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 
 0.581
CLOAM1182
NADH-quinone oxidoreductase subunit E; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
   
 
 0.485
hymA
[Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit gamma; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
 0.485
CLOAM1686
NADH-quinone oxidoreductase subunit E; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
 0.485
CLOAM0084
ABC-type transport systems, involved in lipoprotein release, permease components.
       0.474
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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