STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLOAM0271Hypothetical protein; No homology to any previously reported sequences. (655 aa)    
Predicted Functional Partners:
CLOAM0272
Putative 3'-5' exoribonuclease yhaM.
       0.762
ribF
Riboflavin biosynthesis protein [Includes: Riboflavin kinase (Flavokinase); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ribF family.
       0.746
truB
Pseudouridine synthase; Belongs to the pseudouridine synthase TruB family.
       0.525
CLOAM0273
Metallo-beta-lactamase family protein.
       0.513
CLOAM0268
Hypothetical protein; No homology to any previously reported sequences.
       0.415
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.