STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rffGdTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (356 aa)    
Predicted Functional Partners:
CLOAM0644
Putative dTDP-6-deoxy-D-glucose-3,5-epimerase.
 
 0.997
CLOAM0278
parB-like domain protein; Belongs to the ParB family.
       0.773
CLOAM0277
Soj protein.
       0.752
CLOAM0663
GDP-mannose 6-dehydrogenase (GMD).
  
  
 0.690
ugd
UDP-glucose 6-dehydrogenase.
  
  
 0.690
rsmG
Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
    0.682
CLOAM0275
Hypothetical protein; No homology to any previously reported sequences.
       0.674
CLOAM0648
Putative Glycosyl transferase, family 2.
 
  
 0.619
CLOAM0243
Hypothetical protein; No homology to any previously reported sequences.
  
  
 0.595
CLOAM0654
Hypothetical protein; No homology to any previously reported sequences.
  
  
 0.595
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.