Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
rluBRibosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. (279 aa)    
Predicted Functional Partners:
engA
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.860
xthA
Exonuclease III.
  
    0.852
CLOAM0346
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.819
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the cytidylate kinase family. Type 1 subfamily.
 
  
 0.816
CLOAM0344
Hypothetical protein; No homology to any previously reported sequences.
       0.778
ftsK
DNA translocase ftsK (DNA translocase SpoIIIE); Function of homologous gene experimentally demonstrated in an other organism; phenotype; Belongs to the FtsK/SpoIIIE/SftA family.
       0.733
CLOAM0349
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase,truncation.
  
    0.710
CLOAM0348
Hypothetical protein; No homology to any previously reported sequences.
       0.705
CLOAM0350
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.656
truB
Pseudouridine synthase; Belongs to the pseudouridine synthase TruB family.
 
   
 0.567
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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