STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rluBRibosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. (279 aa)    
Predicted Functional Partners:
engA
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.868
CLOAM0346
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.817
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the cytidylate kinase family. Type 1 subfamily.
 
  
 0.795
CLOAM0344
Hypothetical protein; No homology to any previously reported sequences.
       0.779
ftsK
DNA translocase ftsK (DNA translocase SpoIIIE); Function of homologous gene experimentally demonstrated in an other organism; phenotype; Belongs to the FtsK/SpoIIIE/SftA family.
       0.733
xthA
Exonuclease III.
  
    0.720
CLOAM0349
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase,truncation.
  
    0.711
CLOAM0348
Hypothetical protein; No homology to any previously reported sequences.
       0.705
CLOAM0350
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.661
hydEF-2
Fe-hydrogenase assembly protein (C-terminal fragment); Function of strongly homologous gene; enzyme.
  
  
 0.583
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.