STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLOAM0643CDP-glucose 4,6-dehydratase. (365 aa)    
Predicted Functional Partners:
CLOAM0642
Glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase).
 
 0.996
CLOAM0645
Lipopolysaccharide biosynthesis protein rfbH; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.992
CLOAM0644
Putative dTDP-6-deoxy-D-glucose-3,5-epimerase.
  
  
 0.841
CLOAM0878
Putative 4-alpha-glucanotransferase.
  
 
  0.822
CLOAM1098
Putative glucose-1-phosphate uridylyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.808
CLOAM0647
Perosamine synthetase; Putative uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.777
CLOAM0648
Putative Glycosyl transferase, family 2.
  
  
 0.747
CLOAM0646
Putative Nitric oxide dioxygenase; No homology to any previously reported sequences.
       0.737
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
   
  0.666
rpsS
30S ribosomal subunit protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.665
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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