STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLOAM0645Lipopolysaccharide biosynthesis protein rfbH; Belongs to the DegT/DnrJ/EryC1 family. (438 aa)    
Predicted Functional Partners:
CLOAM0643
CDP-glucose 4,6-dehydratase.
 
 
 0.992
CLOAM0642
Glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase).
  
 0.901
CLOAM0644
Putative dTDP-6-deoxy-D-glucose-3,5-epimerase.
  
  
 0.826
CLOAM0647
Perosamine synthetase; Putative uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent; Belongs to the DegT/DnrJ/EryC1 family.
 
    
0.801
CLOAM0648
Putative Glycosyl transferase, family 2.
  
  
 0.750
CLOAM0646
Putative Nitric oxide dioxygenase; No homology to any previously reported sequences.
       0.737
CLOAM0673
Hypothetical protein; No homology to any previously reported sequences; Belongs to the DegT/DnrJ/EryC1 family.
  
     0.704
CLOAM0641
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.581
rffG
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.561
CLOAM0656
Putative Mannose-1-phosphate guanylyltransferase; Homologs of previously reported genes of unknown function.
  
  
 0.559
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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