STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Coexpression
Experiments
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[Homology]
Score
CLOAM0740Tetratricopeptide repeat transcriptional regulator (modular protein). (402 aa)    
Predicted Functional Partners:
CLOAM0739
Putative RNA polymerase, sigma S (sigma 38) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.805
CLOAM0741
Putative acylphosphatase (Acylphosphate phosphohydrolase).
       0.799
mrcA
Penicillin-binding bifunctional protein 1A (PBP-1a) (PBP1a); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.768
CLOAM0934
Monofunctional biosynthetic peptidoglycan transglycosylase (Monofunctional TGase) (fragment); Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family.
 
  
 0.757
CLOAM1516
Putative N-acetylmuramoyl-L-alanine amidase; No homology to any previously reported sequences.
 
  
 0.721
murE
UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
 
   
 0.707
CLOAM1786
Hypothetical protein; No homology to any previously reported sequences.
 
   
 0.680
mltG
Predicted periplasmic solute-binding protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
  
 0.641
rlmH
Conserved hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
  
    0.640
CLOAM0787
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
 
 0.606
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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