STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potCSpermidine/putrescine transport system permease protein potC (ABC transporter); Function of homologous gene experimentally demonstrated in an other organism; transporter. (266 aa)    
Predicted Functional Partners:
potB
Spermidine/putrescine transport system permease protein potB (ABC transporter); Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
0.999
potD
Spermidine/putrescine-binding periplasmic protein precursor (SPBP); Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 0.999
potA
Spermidine/putrescine import ATP-binding protein potA (ABC transporter); Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.997
CLOAM0769
Peptidylarginine deiminase precursor (modular protein); Belongs to the agmatine deiminase family.
  
  
 0.469
CLOAM0192
Hypothetical protein; No homology to any previously reported sequences.
   
    0.416
CLOAM0180
RNA-binding S4.
   
    0.410
ycjV
Putative sugar transporter subunit: ATP-binding component of ABC superfamily transporter; Belongs to the ABC transporter superfamily.
   
 0.410
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.