STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
CLOAM0876Putative sigma-54 dependent DNA-binding response regulator. (471 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor.
 
  
 0.798
kdd
3,5-diaminohexanoate dehydrogenase; Function experimentally demonstrated in the studied organism; enzyme.
 
      0.793
CLOAM0878
Putative 4-alpha-glucanotransferase.
  
   0.786
tsaD
Putative metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
       0.775
CLOAM0875
Hypothetical protein; No homology to any previously reported sequences.
       0.773
CLOAM0877
Putative alpha-amylase.
       0.773
CLOAM0879
Putative Glycogen debranching enzyme, archaeal type.
       0.773
CLOAM1189
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
      0.558
CLOAM1546
Hypothetical protein; No homology to any previously reported sequences.
 
 
 
0.465
CLOAM1048
Putative Protein kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 
 0.443
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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