Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CLOAM0963Putative dye-linked L-proline dehydrogenase (pdhB); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (384 aa)    
Predicted Functional Partners:
CLOAM0964
Putative dye-linked L-proline dehydrogenase (pdhA); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.992
gcvT
Aminomethyltransferase (Glycine cleavage system T protein); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the GcvT family.
  
 
 0.782
aorA
Tungsten-containing aldehyde ferredoxin oxidoreductase, alpha chain; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.612
CLOAM1631
Dihydropyrimidine dehydrogenase (NADP+); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.492
CLOAM0437
Hypothetical protein; No homology to any previously reported sequences.
  
   
 0.477
CLOAM1486
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; putative enzyme.
  
  
 0.473
CLOAM0882
Alanine racemase (partial match, alr-like); Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.452
CLOAM0965
Hypothetical protein; No homology to any previously reported sequences.
       0.427
CLOAM0324
Pyruvate-ferredoxin/flavodoxin oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.413
metG
Methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS); Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
 0.409
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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