STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLOAM0966Putative Permease. (362 aa)    
Predicted Functional Partners:
CLOAM0967
Putative Permease YjgP/YjgQ.
  
 
0.996
lptB
Putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily.
 
 
 0.985
CLOAM0969
5-aminopentanamidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.816
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.773
hydEF-2
Fe-hydrogenase assembly protein (C-terminal fragment); Function of strongly homologous gene; enzyme.
       0.773
CLOAM1034
Hypothetical protein; No homology to any previously reported sequences.
  
   
 0.699
CLOAM1763
Hypothetical protein; No homology to any previously reported sequences.
  
 
 0.688
CLOAM0608
MotA/TolQ/ExbB proton channel family protein (modular protein).
  
     0.679
CLOAM1176
Putative increased membrane permeability protein or organic solvent tolerance protein (imp-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
  
 0.631
CLOAM1493
Hypothetical protein; No homology to any previously reported sequences.
 
     0.610
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.