STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLOAM0967Putative Permease YjgP/YjgQ. (442 aa)    
Predicted Functional Partners:
CLOAM0966
Putative Permease.
  
 
0.996
lptB
Putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily.
 
 
 0.987
CLOAM0969
5-aminopentanamidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.815
CLOAM1763
Hypothetical protein; No homology to any previously reported sequences.
  
 
 0.798
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.777
hydEF-2
Fe-hydrogenase assembly protein (C-terminal fragment); Function of strongly homologous gene; enzyme.
       0.774
CLOAM1176
Putative increased membrane permeability protein or organic solvent tolerance protein (imp-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
  
 0.768
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
    0.691
CLOAM1034
Hypothetical protein; No homology to any previously reported sequences.
  
   
 0.688
CLOAM1225
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.644
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.