STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLOAM0975Protein umuD [Contains: Protein umuD']; Belongs to the peptidase S24 family. (147 aa)    
Predicted Functional Partners:
CLOAM0776
Protein umuC.
 
 
 0.854
recA
DNA strand exchange and recombination protein with protease and nuclease activity; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.834
CLOAM0976
Hypothetical protein; No homology to any previously reported sequences.
 
     0.799
CLOAM0977
Putative Membrane protein, precursor.
       0.773
CLOAM0974
Hypothetical protein; No homology to any previously reported sequences.
       0.586
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
  
 0.544
dinG
Putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (dnaQ-like) (DinG-like helicase); 3'-5' exonuclease.
  
  
 0.522
CLOAM0978
Hypothetical protein; No homology to any previously reported sequences.
       0.438
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.414
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.