STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLOAM1035Putative Transcriptional regulator, TetR family. (199 aa)    
Predicted Functional Partners:
CLOAM1032
Outer membrane efflux protein (fragment); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.854
CLOAM1033
Hypothetical protein; No homology to any previously reported sequences; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.801
CLOAM1034
Hypothetical protein; No homology to any previously reported sequences.
     
 0.799
CLOAM1048
Putative Protein kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 
 0.581
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.517
CLOAM1030
NifU-like domain protein.
       0.490
CLOAM1031
Hypothetical protein; No homology to any previously reported sequences.
       0.490
CLOAM1875
Hypothetical protein; No homology to any previously reported sequences.
   
 
 0.437
rpoN
RNA polymerase sigma-54 factor.
  
 
 0.430
CLOAM1036
Hypothetical protein; Doubtful CDS.
       0.405
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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