STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLOAM1158Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (369 aa)    
Predicted Functional Partners:
CLOAM1017
Putative Protein-tyrosine-phosphatase; No homology to any previously reported sequences; Belongs to the SUA5 family.
  
  
 0.654
mdh
Malate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the LDH2/MDH2 oxidoreductase family.
       0.605
CLOAM1160
Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
       0.605
glnS
glutamyl-tRNA synthetase.
 
      0.532
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
  
    0.443
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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