STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hymB[Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (619 aa)    
Predicted Functional Partners:
CLOAM1182
NADH-quinone oxidoreductase subunit E; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 0.999
hymA
[Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit gamma; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 0.999
CLOAM1684
Formate dehydrogenase major subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
 0.999
CLOAM1686
NADH-quinone oxidoreductase subunit E; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 0.999
hymC
[Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit alpha; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.992
CLOAM0324
Pyruvate-ferredoxin/flavodoxin oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.987
acpP
Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.981
CLOAM0680
Putative acyl carrier protein (acpP-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
   
 0.981
CLOAM0080
Putative Peptidase, M16 family; Belongs to the peptidase M16 family.
  
 0.967
CLOAM0917
Putative zinc protease (metalloendopeptidase) (ymxG module); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the peptidase M16 family.
  
 0.967
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.