STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLOAM1237Hypothetical protein; No homology to any previously reported sequences. (174 aa)    
Predicted Functional Partners:
ispA
Geranylgeranyl pyrophosphate synthetase homolog (GGPP synthetase) (Farnesyltranstransferase); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the FPP/GGPP synthase family.
  
 
 0.920
CLOAM1320
Putative geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 
 0.920
ispU
Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
     
  0.900
CLOAM0903
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.786
CLOAM1235
Hypothetical protein; No homology to any previously reported sequences.
       0.779
CLOAM1234
Hypothetical protein; No homology to any previously reported sequences.
       0.773
CLOAM1236
ABC transporter, ATP-binding protein.
       0.773
mrcA
Penicillin-binding bifunctional protein 1A (PBP-1a) (PBP1a); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.773
CLOAM1239
Hypothetical protein; No homology to any previously reported sequences.
 
     0.753
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
       0.747
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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