STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
malFABC-type sugar transport systems, permease components. (310 aa)    
Predicted Functional Partners:
CLOAM1248
Sugar permeases (modular protein).
 
 0.999
ycjV
Putative sugar transporter subunit: ATP-binding component of ABC superfamily transporter; Belongs to the ABC transporter superfamily.
 
 
 0.994
CLOAM0889
Putative Sugar ABC transporter, periplasmic sugar-binding protein.
 
 0.980
CLOAM1249
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.707
CLOAM0972
Putative Cyclomaltodextrinase; No homology to any previously reported sequences; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.675
CLOAM1245
Aminotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
       0.520
CLOAM1251
Putative ferredoxin, 4Fe-4S; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
       0.426
CLOAM1250
Putative 4Fe-4S ferredoxin-type protein (yccM); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
       0.421
CLOAM1252
Hypothetical protein; No homology to any previously reported sequences.
       0.421
CLOAM1039
Putative 4-alpha-glucanotransferase.
  
  
 0.412
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.