STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLOAM1390Type IV pilus biogenesis protein PilB. (569 aa)    
Predicted Functional Partners:
CLOAM1389
Type IV pilus biogenesis protein PilC.
 
 0.997
CLOAM0731
Putative bifunctional prepilin leader peptidase and methylase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.894
CLOAM1396
Putative type IV pilus biogenesis protein PilM.
 
 
 0.880
CLOAM1392
Hypothetical protein; No homology to any previously reported sequences.
 
  
 0.869
CLOAM1395
Hypothetical protein; No homology to any previously reported sequences.
  
 
 0.862
CLOAM1401
Putative Pilus biogenesis protein tapA precursor.
 
 
 0.735
CLOAM0390
Hypothetical protein; No homology to any previously reported sequences.
  
  
 0.670
pilT-
Twitching motility protein PilT.
 
  
0.662
CLOAM1609
Single-stranded DNA-binding protein (modular protein).
  
  
 0.614
CLOAM0641
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.576
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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