Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lptBPutative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily. (261 aa)    
Predicted Functional Partners:
CLOAM1763
Hypothetical protein; No homology to any previously reported sequences.
  
 0.986
CLOAM0966
Putative Permease.
 
 
 0.985
CLOAM0967
Putative Permease YjgP/YjgQ.
 
 
 0.983
CLOAM1762
Hypothetical protein; No homology to any previously reported sequences.
  
  
 0.857
rpoN
RNA polymerase sigma-54 factor.
 
  
 0.837
CLOAM1755
Ribosome-associated, sigma 54 modulation protein (modular protein).
  
  
 0.812
lpdA
Dihydrolipoyl dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.779
CLOAM0991
MotA/TolQ/ExbB proton channel family protein (fragment).
 
   
 0.753
CLOAM0608
MotA/TolQ/ExbB proton channel family protein (modular protein).
 
   
 0.721
lpxA
UDP-N-acetylglucosamine acetyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.706
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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