Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
rodARod shape-determining protein RodA; Belongs to the SEDS family. (406 aa)    
Predicted Functional Partners:
mrdA
Penicillin-binding protein 2 (PBP-2); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.995
CLOAM0787
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
 0.938
ftsW
Essential cell division protein FtsW; Function of homologous gene experimentally demonstrated in an other organism; membrane component; Belongs to the SEDS family.
  
  
 
0.927
mreB
Cell wall structural complex MreBCD, actin-like component MreB.
 
 
 0.909
CLOAM1806
Hypothetical protein; No homology to any previously reported sequences.
 
  
 0.891
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
 0.883
CLOAM0780
Putative cell division protein FtsQ (ftsQ-like); Essential cell division protein.
  
 
 0.784
CLOAM1804
Hypothetical protein; No homology to any previously reported sequences.
       0.773
CLOAM1805
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.773
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
  
 0.769
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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