STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
ycjVPutative sugar transporter subunit: ATP-binding component of ABC superfamily transporter; Belongs to the ABC transporter superfamily. (367 aa)    
Predicted Functional Partners:
malF
ABC-type sugar transport systems, permease components.
 
 
 0.994
CLOAM0889
Putative Sugar ABC transporter, periplasmic sugar-binding protein.
 
 
 0.988
CLOAM1248
Sugar permeases (modular protein).
 
 0.985
CLOAM0412
ABC transporter, ATP-binding protein, MsbA family (modular protein).
 
 
   
0.897
CLOAM1020
Putative ABC transporter (membrane (N-terminal),atp_bind (C-terminal)); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
   
0.858
CLOAM0084
ABC-type transport systems, involved in lipoprotein release, permease components.
 
      0.827
potB
Spermidine/putrescine transport system permease protein potB (ABC transporter); Function of homologous gene experimentally demonstrated in an other organism; transporter.
    
 0.666
CLOAM0972
Putative Cyclomaltodextrinase; No homology to any previously reported sequences; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.597
CLOAM1019
Putative ABC transporter, transmembrane region:ABC transporter related.
 
 
   
0.582
CLOAM1355
Putative cobalt import ATP-binding protein (ABC transporter) (cbiO-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
  
 
0.571
Your Current Organism:
Cloacimonas acidaminovorans
NCBI taxonomy Id: 459349
Other names: C. Cloacimonas acidaminovorans str. Evry, Candidatus Cloacamonas acidaminovorans str. Evry, Candidatus Cloacimonas acidaminovorans str. Evry
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