STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sbcDExodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (388 aa)    
Predicted Functional Partners:
SDG99041.1
Exonuclease SbcC.
 
 0.999
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.990
SDH60581.1
Uncharacterized protein YhaN.
  
 0.988
SDG71108.1
ATP-dependent DNA helicase RecQ.
  
 0.902
SDH17231.1
ATP-dependent DNA helicase RecQ.
  
 0.902
SDH63960.1
5'-3' exonuclease.
   
 0.900
SDH04441.1
Sulfate permease, SulP family.
  
   0.875
recA
Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.772
SDI07221.1
Zn-dependent protease with chaperone function.
   
  0.700
SDI16370.1
SMI1 / KNR4 family (SUKH-1).
    
  0.699
Your Current Organism:
Planomicrobium glaciei
NCBI taxonomy Id: 459472
Other names: CGMCC 1.6846, JCM 15088, P. glaciei, Planomicrobium glaciei Zhang et al. 2009, Planomicrobium sp. 0423, strain 0423
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