STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH18250.1Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain. (182 aa)    
Predicted Functional Partners:
SDH18198.1
Methyltransferase domain-containing protein.
       0.540
SDI62760.1
Uncharacterized membrane protein.
  
     0.456
SDI41370.1
Hypothetical protein.
  
     0.453
SDH13071.1
Putative SAM-dependent methyltransferase.
 
     0.420
SDI13418.1
FAD/FMN-containing dehydrogenase.
  
 
   0.406
SDH86959.1
Glycosyltransferase involved in cell wall bisynthesis.
  
  
 0.400
SDI41160.1
VanW like protein.
  
     0.400
Your Current Organism:
Planomicrobium glaciei
NCBI taxonomy Id: 459472
Other names: CGMCC 1.6846, JCM 15088, P. glaciei, Planomicrobium glaciei Zhang et al. 2009, Planomicrobium sp. 0423, strain 0423
Server load: low (20%) [HD]